Xeroderma Pigmentosum Group A Suppresses Mutagenesis Caused by Clustered Oxidative DNA Adducts in the Human Genome.

Authors:
Sassa A, Kamoshita N, Kanemaru Y, Honma M, Yasui M.
In:
Source: PLoS ONE
Publication Date: (2015)
Issue: 10(11): e0142218
Research Area:
Cancer Research/Cell Biology
Gene Expression
Molecular Biology
Platform:
Nucleofector® I/II/2b
Experiment
The authors generated XPA Knockout cells by using ZFNs targeting XPA.The target sequence for ZFN, that is located in exon 1 of the XPA gene, was as follows: 5'-CAGGCCCGGCTGGCTGCCCggcccTACTCGGCGACGGCGGCT-3'. ZFN mRNA (2 µg) was transfected into TSCER122 cells (which are derived from the TK6 cell line). They Nucleofected 5 million cells per reaction using Nucleofector solution V and Nucleofector I device. After 24 h in culturing medium, cells were seeded into 96-microwell plates at 1.6 cells/well (i.e., 8 cells/ml) and then incubated at 37°C for 7–10 days. Genomic DNA was isolated from colonies and subjected to PCR using KOD FX with the primers 5'-AGCTAGGTCCTCGGAGTGG-3' and 5'-GGACAGGACGCTTTGACAAG-3'. The amplified DNA fragment was then sequenced to confirm deletion around the ZFN target site.
Abstract
Clustered DNA damage is defined as multiple sites of DNA damage within one or two helical turns of the duplex DNA. This complex damage is often formed by exposure of the genome to ionizing radiation and is difficult to repair. The mutagenic potential and repair mechanisms of clustered DNA damage in human cells remain to be elucidated. In this study, we investigated the involvement of nucleotide excision repair (NER) in clustered oxidative DNA adducts. To identify the in vivo protective roles of NER, we established a human cell line lacking the NER gene xeroderma pigmentosum group A (XPA). XPA knockout (KO) cells were generated from TSCER122 cells derived from the human lymphoblastoid TK6 cell line. To analyze the mutagenic events in DNA adducts in vivo, we previously employed a system of tracing DNA adducts in the targeted mutagenesis (TATAM), in which DNA adducts were site-specifically introduced into intron 4 of thymidine kinase genes. Using the TATAM system, one or two tandem 7,8-dihydro-8-oxoguanine (8-oxoG) adducts were introduced into the genomes of TSCER122 or XPA KO cells. In XPA KO cells, the proportion of mutants induced by a single 8-oxoG (7.6%) was comparable with that in TSCER122 cells (8.1%). In contrast, the lack of XPA significantly enhanced the mutant proportion of tandem 8-oxoG in the transcribed strand (12%) compared with that in TSCER122 cells (7.4%) but not in the non-transcribed strand (12% and 11% in XPA KO and TSCER122 cells, respectively). By sequencing the tandem 8-oxoG-integrated loci in the transcribed strand, we found that the proportion of tandem mutations was markedly increased in XPA KO cells. These results indicate that NER is involved in repairing clustered DNA adducts in the transcribed strand in vivo.